CNI-ANNOUNCE logo

CNI-ANNOUNCE

Archives
Subscribe
Aug. 6, 2015, 4:16 p.m.

"PLoS ONE Paper on Sizing Discovery and Access Challenges for

CNI-ANNOUNCE CNI-ANNOUNCE

I want to share a pointer to a paper published in PLoS ONE July 24, 2015 titled "Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study" by Kevin Read et al.

Sizing the Problem of Improving Discovery and Access to NIH-Funded Data: A Preliminary Study | PLOS One

Objective This study informs efforts to improve the discoverability of and access to biomedical datasets by providing a preliminary estimate of the number and type of datasets generated annually by research funded by the U.S. National Institutes of Health (NIH). It focuses on those datasets that are “invisible” or not deposited in a known repository. Methods We analyzed NIH-funded journal articles that were published in 2011, cited in PubMed and deposited in PubMed Central (PMC) to identify th...

This is an excellent example of work that is badly needed to help us ot better understand the scale of the challenge of managing research data to facilitate its discovery and reuse by other scholars, and to illuminate the roles that repositories of various types may play in this effort. I've reproduced the abstract below.

Clifford Lynch Director, CNI


Objective This study informs efforts to improve the discoverability of and access to biomedical datasets by providing a preliminary estimate of the number and type of datasets generated annually by research funded by the U.S. National Institutes of Health (NIH). It focuses on those datasets that are "invisible" or not deposited in a known repository. Methods We analyzed NIH-funded journal articles that were published in 2011, cited in PubMed and deposited in PubMed Central (PMC) to identify those that indicate data were submitted to a known repository. After excluding those articles, we analyzed a random sample of the remaining articles to estimate how many and what types of invisible datasets were used in each article. Results About 12% of the articles explicitly mention deposition of datasets in recognized repositories, leaving 88% that are invisible datasets. Among articles with invisible datasets, we found an average of 2.9 to 3.4 datasets, suggesting there were approximately 200,000 to 235,000 invisible datasets generated from NIH-funded research published in 2011. Approximately 87% of the invisible datasets consist of data newly collected for the research reported; 13% reflect reuse of existing data. More than 50% of the datasets were derived from live human or non-human animal subjects. Conclusion In addition to providing a rough estimate of the total number of datasets produced per year by NIH-funded researchers, this study identifies additional issues that must be addressed to improve the discoverability of and access to biomedical research data: the definition of a "dataset," determination of which (if any) data are valuable for archiving and preservation, and better methods for estimating the number of datasets of interest. Lack of consensus amongst annotators about the number of datasets in a given article reinforces the need for a principled way of thinking about how to identify and characterize biomedical datasets.

You just read issue #1086 of CNI-ANNOUNCE. You can also browse the full archives of this newsletter.

← Newer Material from June 4, 2016 Web Archiving Conference at Columbia Older → Designing Libraries IV Program and Speakers Available
LinkedIn
Mastodon
www.facebook.com
Bluesky
YouTube